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Recent News and Articles on the Keywords: data management + microbial genomes + img  Related to the article below (Last Update: 5/13/2008)

Applied Biosystems Genomic Analysis Platform Fuels New Era of Life ...
FOXBusiness - May 6, 2008
The data generated as part of the 1000 Genomes Project are expected to reveal clues about how variant DNA sequences contribute to conditions such as cancer, ...ABI - LSR
Baylor College of Medicine to Use Applied Biosystems Genetic ...
Business Wire (press release), CA - Apr 24, 2008
HGSC?s decision to use the SOLiD System for the 1000 Genomes Project was in part based on a comparative study of microbial and mammalian genomes sequenced ...ABI
Wellcome Trust Sanger Institute and Applied Biosystems Announce ...
Business Wire (press release), CA - May 1, 2008
Preliminary scientific findings resulting from this collaboration will be presented at the Cold Spring Harbor Laboratory?s Biology of Genomes meeting in New ...ABI
Can IT fuel the race to the $1000 human genome?
News-Medical.net, Australia - Apr 21, 2008
These new systems produce enormous amounts of data - one run could generate close to one terabyte of data - and bioinformatics and data management tools ...
Source: Google News

The integrated microbial genomes (IMG) system -
VM Markowitz, F Korzeniewski, K Palaniappan, E … - Nucleic Acids Research - Oxford Univ Press
... The integrated microbial genomes (IMG) system is a new data management and analysis
platform for microbial genomes provided by the Joint Genome Institute (JGI ...

An experimental metagenome data management and analysis system -
VM Markowitz, N Ivanova, K Palaniappan, E Szeto, F … - Bioinformatics, 2006 - Oxford Univ Press
... We present in this paper IMG/M, an experimental metagenome data management and analysis
system that is based on the Integrated Microbial Genomes (IMG) system. ...

The integrated microbial genomes (IMG) system: a case study in biological data management -
VM Markowitz, F Korzeniewski, K Palaniappan, E … - … of the 31st international conference on Very large data …, 2005 - portal.acm.org
... application requirements for developing a biological data management system in the
context of the Integrated Microbial Genomes (IMG) data management system [11 ...

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions -
VM Markowitz, E Szeto, K Palaniappan, Y Grechkin, … - Nucleic Acids Research, 2008 - Oxford Univ Press
... The integrated microbial genomes (IMG) system is a data management, analysis
and annotation platform for all publicly available genomes. ...

A Computational Biology Database Digest: Data, Data Analysis, and Data Management -
F Bry, P Kr?ger - Distributed and Parallel Databases, 2003 - Springer
... organism (eg the Human Genome Database GDB [69] on the Human Genome Project or ... away
from the state-of-the-art in data modeling, data data management, and query ...

Symbiosis insights through metagenomic analysis of a microbial consortium -
T Woyke, H Teeling, NN Ivanova, M Huntemann, M … - Nature, 2006 - nature.com
... energy supply and waste management through resource ... HT and FOG, unpublished data)
and annotation ... the metagenomics version of Integrated Microbial Genomes/M (IMG ...

GIMS: an integrated data storage and analysis environment for genomic and functional data -
M Cornell, NW Paton, C Hedeler, P Kirby, D Delneri … - Yeast, 2003 - doi.wiley.com
... The Genome Information Management System (GIMS) is ... cerevisiae data, and we demonstrate
how the integrated storage of diverse types of data can be ...

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods -
K Mavromatis, N Ivanova, K Barry, H Shapiro, E … - Nature Methods, 2007 - nature.com
... Simulated data sets We constructed three simulated metagenomic data sets of ... DOE-JGI)
and available through the Integrated Microbial Genomes (IMG) system 13 . ...

MBGD: a platform for microbial comparative genomics based on the automated construction of … -
I Uchiyama - Nucleic Acids Research, 2007 - Oxford Univ Press
... implemented in the MySQL database management system ... AlignmentViewer), which reads
the data from the ... (2006) The integrated microbial genomes (IMG) system Nucleic ...

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their … -
K Liolios, K Mavromatis, N Tavernarakis, NC … - Nucleic Acids Research, 2008 - Oxford Univ Press
... The Integrated Microbial Genomes (IMG) system. Nucleic Acids Res. (2006)
34:D344?D348. ... An Experimental Metagenome Data Management and Analysis System. ...

Source: Google Scholar

Latest Integrated Microbial Genomes (IMG) Data Management System Update Release

DOE Joint Genome Institute to Host September IMG Workshop

WALNUT CREEK, CA--Version 2.4 of the Integrated Microbial Genomes (IMG) data management system, a resource provided to the scientific community for microbial genome data analysis, has now been released. Hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI), IMG has built a popular following as reflected in the overwhelming response to IMG workshops offered in Spring 2008, now full. DOE JGI has added a fall session, September 15-19, 2008. Registration is now open at http://www.jgi.doe.gov/meetings/mgm/.

IMG 2.4's content has been updated with new microbial genomes from the Version 25 release of the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq). IMG 2.4 also contains a total of 3,637 genomes consisting of 818 bacterial, 50 archaeal, and 40 eukaryotic genomes; 2,042 viruses and bacterial phages; and 687 plasmids. Among these genomes, there are 3,334 finished and 303 draft genomes, of which 256 (185 finished and 71 draft) are genomes sequenced by DOE JGI.

The IMG native controlled vocabulary of functional terms and pathways has been extended to 4,148 terms and 524 pathways, with 546,169 genes characterized using IMG terms. Functional annotation of genomes in IMG has been further enhanced through the computation of fused genes and by filling in various RNA genes missing from the original genome data sets.

IMG's user interface has been reorganized and enhanced to improve ease of use. IMG's user manual, UsingIMG, has been revised and extended. For more details, see What's New (and Using IMG at http://img.jgi.doe.gov/.

IMG is a collaborative effort between DOE JGI and the Lawrence Berkeley National Laboratory Biological Data Management and Technology Center (BDMTC). IMG is updated on a quarterly basis with new public and DOE JGI genomes. The next IMG update is scheduled for March, 2008.

The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, unites the expertise of five national laboratories -- Lawrence Berkeley, Lawrence Livermore, Los Alamos, Oak Ridge, and Pacific Northwest -- along with the Stanford Human Genome Center to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI's Walnut Creek, CA, Production Genomics Facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.

For more information, contact
David Gilbert
DOE JGI Public Affairs Manager
(925) 296-5643
degilbert@lbl.gov

 
 
 
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