… of multiple sequence alignment profiles to improve protein secondary structure prediction -
JA Cuff, GJ Barton - Proteins Structure Function and Genetics, 2000 - doi.wiley.com
... This test shows CLUSTALW to be more favor ... for generating multiple sequence alignments
for secondary structure prediction. ... AMPS align- ments are improved 42 when ...
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary … -
DH Mathews, J Sabina, M Zuker, DH Turner - Journal of Molecular Biology, 1999 - Elsevier
... To test the hypothesis that secondary structure prediction can be improved with
experimental constraints from enzymatic and FMN cleavage, four test examples ...
Regression modelling strategies for improved prognostic prediction -
FE Harrell, KL Lee, RM Califf, DB Pryor, RA Rosati - Stat Med, 1984 - doi.wiley.com
... for the single training sample improves as the ... model, as assessed in the test sample,
deteriorates as ... may represent noise and cause prediction ability actually ...
Improving the prediction of protein secondary structure in three and eight classes using recurrent … -
G Pollastri, D Przybylski, B Rost, P Baldi - Proteins Structure Function and Genetics, 2002 - doi.wiley.com
... the results of three different test sets on ... a sustained performance of about 78%
correct prediction. ... and assess the corresponding performance improve- ments. ...
Alignments Grow, Secondary Structure Prediction Improves -
D Przybylski, B Rost - growth, 2002 - doi.wiley.com
... we could not test ClustalW on BIG since our CPU time was too limited ... 11 These extended
profiles have been reported to improve prediction accuracy signifi- cantly ...
Novel methods improve prediction of species' distributions from occurrence data -
J Elith*, C H. Graham*, R P. Anderson, M Dudik, S … - Ecography, 2006 - Blackwell Synergy
... The comments of Mike Austin and Miguel Ara?jo improved the manuscript ... Using
niche-based GIS modeling to test geographic predictions of competitive ...
An improved protein decoy set for testing energy functions for protein structure prediction -
J Tsai, R Bonneau, AV Morozov, B Kuhlman, CA Rohl, … - Proteins Structure Function and Bioinformatics, 2003 - doi.wiley.com
... years has shown a degree of success at de novo structure prediction. ... we use Rosetta
to generate a large and improved decoy set for testing energy functions ...
… functions. II. The testing of an empirical scoring function for the prediction of ligand-receptor … -
CW Murray, TR Auton, MD Eldridge - Journal of Computer-Aided Molecular Design, 1998 - Springer
... The testing of an empirical scoring function for the prediction of ligand-receptor
binding affinities and the use of Bayesian regression to improve the quality ...
Evaluation and Improvement of Multiple Sequence Methods for Protein Secondary Structure Prediction -
JA Cuff, GJ Barton - PROTEINS: Structure, Function, and Genetics, 1999 - doi.wiley.com
... Prediction accuracy has also been improved by combin- ing ... of current techniques for
secondary struc- ture prediction. ... within the training and test datasets and ...
Improved splice site detection in Genie -
MG Reese, FH Eeckman, D Kulp, D Haussler - Proceedings of the first annual international conference on …, 1997 - portal.acm.org
... This new network shows signif- icantly improved prediction performance ... formance on
an independent test set of 50 genes that were not included in the training set ...
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