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Recent News and Articles on the Keywords: arabidopsis + tracking + genes  Related to the article below (Last Update: 8/5/2008)


Scientist
Going to the Dogs
Scientist, UK - Aug 1, 2008
Arabidopsis biologists had recently identified homeotic mutants that had 30 layers of petals instead of one, and Ostrander thought that plants offered a ...
Source: Google News

Annotation of the Arabidopsis Genome -
JR Wortman, BJ Haas, LI Hannick, RK Smith Jr, R … - Plant Physiology, 2003 - Am Soc Plant Biol
... gene identifiers allow users world wide to easily access and track genes. ... There are
several different versions of Arabidopsis annotation in public databases ...

Isolation of an ion channel gene from Arabidopsis thaliana using the H5 signature sequence from … -
KA Ketchum, CW Slayman - FEBS Letters, 1996 - Elsevier
... binding domain, four ankyrin repeats and a poly- glutamate track. ... rectifying K? channels
that includes the Arabidopsis KATI and AKTI genes, previ- ously ...

The Arabidopsis SeedGenes Project -
I Tzafrir, A Dickerman, O Brazhnik, Q Nguyen, J … - Nucleic Acids Research, 2003 - Oxford Univ Press
... is to establish a foundation for identifying every Arabidopsis gene with an ... will
utilize this database to keep track of the full spectrum of genes known to ...

Insertional Mutagenesis of Genes Required for Seed Development in Arabidopsis thaliana -
J McElver, I Tzafrir, G Aux, R Rogers, C Ashby, K … - Genetics, 2001 - Genetics Soc America
... Redmond, WA) database designed to facilitate data tracking. ... were then compared with
the Arabidopsis genome using ... stage were weak alleles of genes required at ...

Genome-Level Evolution of Resistance Genes in Arabidopsis thaliana -
A Baumgarten, S Cannon, R Spangler, G May - Genetics, 2003 - Genetics Soc America
... genome ( LAGERCRANTZ 1998 ; ARABIDOPSIS GENOME INITIATIVE ... rearrangement events with
gene duplication events ... Tracking changes in chromosomal location associated ...

The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis -
A Sokolenko, E Pojidaeva, V Zinchenko, V Panichkin … - Current Genetics, 2002 - Springer
... The homology of Arabidopsis genes was compared withthat of Synechocystis; and members
with significant (in most cases higher than 16%) identity are listed in ...

Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and … -
P Hilson, J Allemeersch, T Altmann, S Aubourg, A … - Genome Research, 2004 - Cold Spring Harbor Lab
... a pair of primers each containing a gene-specific portion ... when compared with the
Arabidopsis nuclear genome ... sequences, BAC instability, or faulty BAC tracking. ...

The RETINOBLASTOMA-RELATED Gene Regulates Stem Cell Maintenance in Arabidopsis Roots -
M Wildwater, A Campilho, JM Perez-Perez, R … - Cell, 2005 - Elsevier
... We show that local reduction of expression of the RETINOBLASTOMA-RELATED (RBR) gene
in Arabidopsis roots increases the amount of stem cells without affecting ...

Fluorescent antibiotic resistance marker for tracking plastid transformation in higher plants -
MS Khan, P Maliga - Nature Biotechnology, 1999 - nature.com
... Tracking plastid transformation in rice by FLARE-S expression. ... Plastid genes 16SrDNA,
trnV, and rps12/7 are ... high GFP expression levels in Arabidopsis were toxic ...

[PDF] Large-scale profiling of the Arabidopsis transcriptome -
T Zhu, X Wang - Plant Physiol, 2000 - cropandsoil.oregonstate.edu
... the purpose of gene discovery using Arabidopsis as a ... First, the transcript abundance
of each gene can be ... often occur dur- ing the clone tracking process are ...
-

Source: Google Scholar
 

Tracking Genes for Self-Pollination in Arabidopsis

Caption: Ultraviolet fluorescence microscopy image of a stigma of an arabidopsis plant that has been genetically modified to resist self-pollination. The left side was self-pollinated and the right side pollinated from another variety, and pollen tubes form only on the cross-pollinated side.

Credit: Nasrallah Lab

Article continues below and (thank you)

 

Some plants need a partner to reproduce. Pollen from one plant pollinates the stigma of another, and a seed is formed. But other plants can self-pollinate, a handy survival mechanism for a lonely plant.

The ability to self-pollinate turns up in cultivated tomatoes and canola, among other important crops, and sometimes it can be a nuisance for plant breeders and seed producers who want to develop highly desirable hybrid varieties and produce hybrid seed on a commercial scale. To get hybrid seed, they plant two different varieties in the same field to allow them to cross-pollinate. But if one or both varieties can self-pollinate, workers must remove the pollen sacs (anthers) from the flowers by hand to prevent "selfing." This is so labor-intensive that it is usually only done in countries where labor is cheap.

Now Cornell researchers are zeroing in on genes that turn a plant's ability to self-pollinate on and off. Their work is described in the May 1 issue of the journal Current Biology and in the journal's online edition.

"The long-term goal is to understand how self-pollination is inhibited in self-incompatible plants, which are unable to self-pollinate because their stigmas can recognize and reject their own pollen. Then you could transfer this ability to any plant and use it to make hybrids," said June Nasrallah, the Barbara McClintock Professor of Plant Biology at Cornell.

Nasrallah's research group is working with Arabidopsis thaliana , a plant related to cabbage and mustard that is widely used in plant genetic research and whose genome has been sequenced. Previously, the group showed that two genes known as SCR and SRK are the key to self-incompatibility. SCR codes for a protein on the surface of pollen grains, and SRK codes for a receptor in the cell membranes of stigma cells. When these two proteins come from the same plant, the stigma rejects the pollen, and fertilization does not occur.

A. thaliana is highly self-fertile, but the Nasrallah group inserted SCR and SRK genes from another species, A. lyrata , which is self-incompatible, and created A. thaliana varieties that ranged from self-incompatible to "pseudo self-compatible," where a plant resists self-pollination for a while, but if it is not pollinated from another plant it will eventually accept its own pollen. In nature, pseudo self-compatibility is a best-of-two-worlds mating strategy, Nasrallah said, because it maintains the benefits of out-crossing while providing reproductive assurance when mates or pollinators are scarce.

In the latest research, Pei Liu, a postdoctoral researcher in Nasrallah's laboratory, and colleagues mapped the genomes of several varieties of transgenic A. thaliana in fine detail and isolated a gene known as PUB8 that seems to regulate the expression of SRK -- that is, whether or not it is turned on to manufacture its protein. The PUB8 gene shows some variation from one variety of A. thaliana to another, i.e., the DNA sequence contains a few different bases here and there. The degree to which self-incompatibility is turned on in the plant seems to correlate with these variations. PUB8-mediated pseudo self-compatibility might have been a transitional phase in the evolutionary switch from self-incompatibility to selfing in A. thaliana , Nasrallah speculates.

PUB8 is very close to SCR and SRK on the genome. It is unusual to find a regulatory gene so close to the gene it regulates, the researchers noted. PUB8 is expressed in other parts of the plant and probably has other functions, they said, adding that still other genes are probably involved in self-incompatibility.

###

Co-authors of the paper, along with Pei and Nasrallah, are graduate student Susan Sherman-Broyles and Mikhail Nasrallah, Cornell professor of plant biology.

 
 
 
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